I have heard blown header gaskets sound just like a rod knock,but if happened right after the clutch install thats probably wheir i would start looking.did you install a new clutch/flywheel? if so, maybe a bolt came loose? it could also be a header leaking.
^^^^^Sounds like a flywheel bolt or maybe a nut or washer from the pressure plate. Definitely need to pull the tranny.It's so erratic and inconsistent. I doubt anything wrong with the motor. Man that sounds like something metallic bouncing off shit. Get that tranny off.