Awesome equipment list, and nice looking install!
Cant wait to hear how you like the IDs... Ive always heard good things about them!
Man thats too bad... Quick suggestion if you haven't sent the box back already... since the v2 boxes come with a recessed mounting ring, you could make some rings out of 3/4" MDF that fit inside the recess and then mount the speakers on those to move them out and get the clearance you need. You'd have to pretty up the rings with carpet or bedliner spray, but at least the whole box would fit and look like it belonged in your car...The freaking subs didn't fit in the Zenclosure box so I had to scramble to find a prefab sealed box locally.