I realize you have a new car but this may not hurt. I had not lubed my hinges and there was a bit of a squawk when closing so I used a penetrating grease on all the moving bits this morning and it’s much better. Now, I only mention this because my top from new always had to be pulled down the last half inch or so, then latched. I partially cycled the top more than several times to move the lube around before closing completely, and to my surprise, all I had to do was turn the handle, the top now fully seats. Maybe this would get you a little more travel.
So we have reached the end of Q1 2024 and I called Ford Customer Service and there is no fix yet! Also, SSM 51960 which says to expect Q1 2024 fix is the latest SSM that I have found on this issue.
Does anyone have any better info?