Do note that the firing order of the Voodoo and the Coyote are different and thus the stock headers were tuned as such. Because they are not a 4 to 1 configuration, I would definitely advise against this...if they would fit.
If you look at the other headers on the market....they really don't appear to be anything different. They are all 4 into one headers using a 3" collector. They have different primary sizes, some are 1 3/4, 1 7/8, or 2" and Kooks is the only one I see that has a stepped header. I do not see a Tri-Y design on any of them or different orientation of the primaries going into the collector
Correction...I definitely missed the NOT stock part. I see what you're trying to do now. Yeah, I would definitely be careful about this, starter clearance, the main pipe mating up to the mid pipe from the headers etc.
So far, everything I can find is that it is the same header between the two cars......save for Kooks which is the only one that is doing a stepped header design for the GT350 cars. Everything else about the headers seems to be the same.